IL_8G5Y_167

3D structure

PDB id

8G5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

UGUA(PSU)(OMG)U*GCGAAG

Length

13 nucleotides

Bulged bases

8G5Y|1|L5|U|4634

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Y_167 not in the Motif Atlas

Geometric match to IL_3BBM_001

Geometric discrepancy: 0.299

The information below is about IL_3BBM_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.2

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8G5Y|1|L5|U|4632
8G5Y|1|L5|G|4633
8G5Y|1|L5|U|4634
8G5Y|1|L5|A|4635
8G5Y|1|L5|PSU|4636
8G5Y|1|L5|OMG|4637
8G5Y|1|L5|U|4638
*
8G5Y|1|L5|G|4661
8G5Y|1|L5|C|4662
8G5Y|1|L5|G|4663
8G5Y|1|L5|A|4664
8G5Y|1|L5|A|4665
8G5Y|1|L5|G|4666

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LW

60S ribosomal protein L24

Chain Ld

60S ribosomal protein L31