IL_8G5Y_226

3D structure

PDB id

8G5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

AG(OMG)GCAAG*CU

Length

10 nucleotides

Bulged bases

8G5Y|1|S2|G|600

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Y_226 not in the Motif Atlas

Homologous match to IL_4V88_413

Geometric discrepancy: 0.0823

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

8G5Y|1|S2|A|599
8G5Y|1|S2|G|600
8G5Y|1|S2|OMG|601
8G5Y|1|S2|G|602
8G5Y|1|S2|C|603
8G5Y|1|S2|A|604
8G5Y|1|S2|A|605
8G5Y|1|S2|G|606
*
8G5Y|1|S2|C|636
8G5Y|1|S2|U|637

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SJ

40S ribosomal protein S9

Chain Se

FAU ubiquitin-like and ribosomal protein S30