IL_8G5Y_272

3D structure

PDB id

8G5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Y_272 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1941

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8G5Y|1|S2|U|1408
8G5Y|1|S2|A|1409
*
8G5Y|1|S2|U|1432
8G5Y|1|S2|C|1433
8G5Y|1|S2|C|1434
8G5Y|1|S2|C|1435
8G5Y|1|S2|C|1436
8G5Y|1|S2|C|1437
8G5Y|1|S2|A|1438

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20