IL_8G5Z_031

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CGGCG*CCCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Z_031 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3963

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

8G5Z|1|L5|C|495
8G5Z|1|L5|G|496
8G5Z|1|L5|G|497
8G5Z|1|L5|C|498
8G5Z|1|L5|G|499
*
8G5Z|1|L5|C|655
8G5Z|1|L5|C|656
8G5Z|1|L5|C|657
8G5Z|1|L5|C|658
8G5Z|1|L5|G|659

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4