IL_8G5Z_070

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GUCUU*AAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Z_070 not in the Motif Atlas

Geometric match to IL_4WF9_012

Geometric discrepancy: 0.3625

The information below is about IL_4WF9_012

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_49061.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

6

Unit IDs

8G5Z|1|L5|G|1753
8G5Z|1|L5|U|1754
8G5Z|1|L5|C|1755
8G5Z|1|L5|U|1756
8G5Z|1|L5|U|1757
*
8G5Z|1|L5|A|1775
8G5Z|1|L5|A|1776
8G5Z|1|L5|C|1777

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10