IL_8G5Z_122

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Z_122 not in the Motif Atlas

Geometric match to IL_7RQB_031

Geometric discrepancy: 0.3699

The information below is about IL_7RQB_031

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8G5Z|1|L5|G|3710
8G5Z|1|L5|A|3711
8G5Z|1|L5|A|3712
8G5Z|1|L5|U|3713
8G5Z|1|L5|G|3714
*
8G5Z|1|L5|C|3739
8G5Z|1|L5|G|3740
8G5Z|1|L5|C|3741

Current chains

Chain L5

28S rRNA

Nearby chains

Chain 5A

eIF5A1

Chain LA

uL2

Chain Lz

uL1

Chain S2

Small subunit ribosomal RNA; SSU rRNA