IL_8G5Z_127

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)U*A(OMC)GCG

Length

18 nucleotides

Bulged bases

8G5Z|1|L5|C|3791, 8G5Z|1|L5|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Z_127 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.5049

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8G5Z|1|L5|C|3781
8G5Z|1|L5|5MC|3782
8G5Z|1|L5|A|3783
8G5Z|1|L5|A|3784
8G5Z|1|L5|A2M|3785
8G5Z|1|L5|U|3786
8G5Z|1|L5|G|3787
8G5Z|1|L5|C|3788
8G5Z|1|L5|C|3789
8G5Z|1|L5|U|3790
8G5Z|1|L5|C|3791
8G5Z|1|L5|OMG|3792
8G5Z|1|L5|U|3793
*
8G5Z|1|L5|A|3807
8G5Z|1|L5|OMC|3808
8G5Z|1|L5|G|3809
8G5Z|1|L5|C|3810
8G5Z|1|L5|G|3811

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA