IL_8G5Z_137

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

ACAU*GAUCGU

Length

10 nucleotides

Bulged bases

8G5Z|1|L5|C|4064

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Z_137 not in the Motif Atlas

Homologous match to IL_8C3A_102

Geometric discrepancy: 0.4409

The information below is about IL_8C3A_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90170.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8G5Z|1|L5|A|3947
8G5Z|1|L5|C|3948
8G5Z|1|L5|A|3949
8G5Z|1|L5|U|3950
*
8G5Z|1|L5|G|4061
8G5Z|1|L5|A|4062
8G5Z|1|L5|U|4063
8G5Z|1|L5|C|4064
8G5Z|1|L5|G|4065
8G5Z|1|L5|U|4066

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain Lz

uL1