3D structure

PDB id
8G5Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.64 Å

Loop

Sequence
GGUGUAGAAUAA*UAC
Length
15 nucleotides
Bulged bases
8G5Z|1|L5|U|3964
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G5Z_139 not in the Motif Atlas
Geometric match to IL_8F4O_005
Geometric discrepancy: 0.2373
The information below is about IL_8F4O_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_38565.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
10

Unit IDs

8G5Z|1|L5|G|3955
8G5Z|1|L5|G|3956
8G5Z|1|L5|U|3957
8G5Z|1|L5|G|3958
8G5Z|1|L5|U|3959
8G5Z|1|L5|A|3960
8G5Z|1|L5|G|3961
8G5Z|1|L5|A|3962
8G5Z|1|L5|A|3963
8G5Z|1|L5|U|3964
8G5Z|1|L5|A|3965
8G5Z|1|L5|A|3966
*
8G5Z|1|L5|U|4055
8G5Z|1|L5|A|4056
8G5Z|1|L5|C|4057

Current chains

Chain L5
28S rRNA

Nearby chains

Chain Lz
uL1
Chain SF
40S ribosomal protein S5
Chain SO
uS11
Chain Sc
40S ribosomal protein S28

Coloring options:


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