IL_8G5Z_169

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

8G5Z|1|L5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Z_169 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2327

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8G5Z|1|L5|G|4680
8G5Z|1|L5|A|4681
8G5Z|1|L5|U|4682
8G5Z|1|L5|U|4683
8G5Z|1|L5|A|4684
8G5Z|1|L5|U|4685
*
8G5Z|1|L5|A|4705
8G5Z|1|L5|G|4706
8G5Z|1|L5|A|4707
8G5Z|1|L5|A|4708
8G5Z|1|L5|U|4709
8G5Z|1|L5|C|4710

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

eL40