IL_8G5Z_219

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

UAC*GUAA

Length

7 nucleotides

Bulged bases

8G5Z|1|S2|A|554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Z_219 not in the Motif Atlas

Geometric match to IL_4KR9_001

Geometric discrepancy: 0.1782

The information below is about IL_4KR9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8G5Z|1|S2|U|530
8G5Z|1|S2|A|531
8G5Z|1|S2|C|532
*
8G5Z|1|S2|G|552
8G5Z|1|S2|U|553
8G5Z|1|S2|A|554
8G5Z|1|S2|A|555

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Se

40S ribosomal protein S30