IL_8G5Z_256
3D structure
- PDB id
- 8G5Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- CC(PSU)G*CGCG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8G5Z_256 not in the Motif Atlas
- Geometric match to IL_3WBM_002
- Geometric discrepancy: 0.3017
- The information below is about IL_3WBM_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8G5Z|1|S2|C|1230
8G5Z|1|S2|C|1231
8G5Z|1|S2|PSU|1232
8G5Z|1|S2|G|1233
*
8G5Z|1|S2|C|1525
8G5Z|1|S2|G|1526
8G5Z|1|S2|C|1527
8G5Z|1|S2|G|1528
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain Pt
- Transfer RNA; tRNA
- Chain SP
- uS19
- Chain SQ
- uS9
- Chain SS
- uS13
- Chain ST
- 40S ribosomal protein S19
- Chain SZ
- eS25
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