IL_8G5Z_270

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

ACUA*U(OMU)CU

Length

8 nucleotides

Bulged bases

8G5Z|1|S2|C|1403, 8G5Z|1|S2|U|1404

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Z_270 not in the Motif Atlas

Geometric match to IL_4V88_456

Geometric discrepancy: 0.1408

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

8G5Z|1|S2|A|1402
8G5Z|1|S2|C|1403
8G5Z|1|S2|U|1404
8G5Z|1|S2|A|1405
*
8G5Z|1|S2|U|1441
8G5Z|1|S2|OMU|1442
8G5Z|1|S2|C|1443
8G5Z|1|S2|U|1444

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

uS9

Chain SU

uS10

Chain Sg

Receptor of activated protein C kinase 1