IL_8G5Z_299

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GUCU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Z_299 not in the Motif Atlas

Geometric match to IL_4PDB_002

Geometric discrepancy: 0.2393

The information below is about IL_4PDB_002

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

8G5Z|1|L5|G|1753
8G5Z|1|L5|U|1754
8G5Z|1|L5|C|1755
8G5Z|1|L5|U|1756
*
8G5Z|1|L5|A|1776
8G5Z|1|L5|C|1777

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5