IL_8G60_010

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

8G60|1|L5|C|143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_010 not in the Motif Atlas

Geometric match to IL_1DQF_001

Geometric discrepancy: 0.1835

The information below is about IL_1DQF_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

8G60|1|L5|C|125
8G60|1|L5|C|126
*
8G60|1|L5|G|142
8G60|1|L5|C|143
8G60|1|L5|G|144

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LG

eL8

Chain LN

eL15

Chain LX

uL23

Chain Lh

uL29