3D structure

PDB id
8G60 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
GCC*GC
Length
5 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G60_014 not in the Motif Atlas
Geometric match to IL_4C7O_002
Geometric discrepancy: 0.2148
The information below is about IL_4C7O_002
Detailed Annotation
Single stack bend
Broad Annotation
Single stack bend
Motif group
IL_90729.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
30

Unit IDs

8G60|1|L5|G|179
8G60|1|L5|C|180
8G60|1|L5|C|181
*
8G60|1|L5|G|256
8G60|1|L5|C|257

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LL
eL13
Chain Lh
uL29

Coloring options:


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