IL_8G60_019

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

8G60|1|L5|C|340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_019 not in the Motif Atlas

Geometric match to IL_7RQB_073

Geometric discrepancy: 0.2563

The information below is about IL_7RQB_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

8G60|1|L5|C|339
8G60|1|L5|C|340
8G60|1|L5|G|341
8G60|1|L5|G|342
*
8G60|1|L8|C|32
8G60|1|L8|G|33

Current chains

Chain L5

28S rRNA

Chain L8

5.8S rRNA

Nearby chains

Chain LC

uL4

Chain LL

eL13

Chain LN

eL15

Chain Lj

eL37