IL_8G60_029

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

8G60|1|L5|G|483, 8G60|1|L5|U|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_029 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.2627

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

8G60|1|L5|G|482
8G60|1|L5|G|483
8G60|1|L5|U|484
8G60|1|L5|C|485
*
8G60|1|L5|G|671
8G60|1|L5|C|672

Current chains

Chain L5

28S rRNA

Nearby chains