IL_8G60_030

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

8G60|1|L5|G|666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_030 not in the Motif Atlas

Geometric match to IL_5ML7_009

Geometric discrepancy: 0.359

The information below is about IL_5ML7_009

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

8G60|1|L5|G|487
8G60|1|L5|G|488
*
8G60|1|L5|C|665
8G60|1|L5|G|666
8G60|1|L5|A|667
8G60|1|L5|C|668
8G60|1|L5|C|669

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

uL4

Chain Lr

eL28