IL_8G60_043

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

8G60|1|L5|A|1238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_043 not in the Motif Atlas

Geometric match to IL_2VPL_002

Geometric discrepancy: 0.2422

The information below is about IL_2VPL_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

8G60|1|L5|G|1073
8G60|1|L5|G|1074
*
8G60|1|L5|C|1237
8G60|1|L5|A|1238
8G60|1|L5|C|1239

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

uL4

Chain LE

eL6

Chain LF

uL30

Chain Lb

eL29