IL_8G60_078
3D structure
- PDB id
- 8G60 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.54 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8G60_078 not in the Motif Atlas
- Geometric match to IL_4V9F_038
- Geometric discrepancy: 0.1123
- The information below is about IL_4V9F_038
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
8G60|1|L5|C|1911
8G60|1|L5|G|1912
8G60|1|L5|C|1913
8G60|1|L5|C|1914
8G60|1|L5|C|1915
8G60|1|L5|G|1916
8G60|1|L5|A|1917
8G60|1|L5|U|1918
*
8G60|1|L5|G|2064
8G60|1|L5|G|2065
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LF
- uL30
- Chain LO
- uL13
- Chain LS
- eL20
- Chain Lf
- eL33
Coloring options: