IL_8G60_093

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_093 not in the Motif Atlas

Geometric match to IL_4V9F_050

Geometric discrepancy: 0.0847

The information below is about IL_4V9F_050

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.1

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

32

Unit IDs

8G60|1|L5|G|2406
8G60|1|L5|G|2407
8G60|1|L5|U|2408
8G60|1|L5|U|2409
*
8G60|1|L5|A|2783
8G60|1|L5|C|2784

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LX

uL23

Chain Lg

eL34

Chain Lj

eL37

Chain Ll

eL39