IL_8G60_119

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

U(PSU)C*GGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_119 not in the Motif Atlas

Geometric match to IL_2ET8_001

Geometric discrepancy: 0.1945

The information below is about IL_2ET8_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

8G60|1|L5|U|3694
8G60|1|L5|PSU|3695
8G60|1|L5|C|3696
*
8G60|1|L5|G|3819
8G60|1|L5|G|3820
8G60|1|L5|A|3821

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

uL2

Chain Ln

eL41

Chain Lp

eL43

Chain S2

Small subunit ribosomal RNA; SSU rRNA