3D structure

PDB id
8G60 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
UG*UAAA
Length
6 nucleotides
Bulged bases
8G60|1|L5|A|3746, 8G60|1|L5|A|3747
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G60_121 not in the Motif Atlas
Homologous match to IL_8C3A_090
Geometric discrepancy: 0.097
The information below is about IL_8C3A_090
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_82107.1
Basepair signature
cWW-cWW
Number of instances in this motif group
34

Unit IDs

8G60|1|L5|U|3704
8G60|1|L5|G|3705
*
8G60|1|L5|U|3745
8G60|1|L5|A|3746
8G60|1|L5|A|3747
8G60|1|L5|A|3748

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LA
uL2
Chain S2
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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