3D structure

PDB id
8G60 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
A(OMG)A*UUU
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G60_138 not in the Motif Atlas
Geometric match to IL_6IA2_004
Geometric discrepancy: 0.1219
The information below is about IL_6IA2_004
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

8G60|1|L5|A|3943
8G60|1|L5|OMG|3944
8G60|1|L5|A|3945
*
8G60|1|L5|U|4068
8G60|1|L5|U|4069
8G60|1|L5|U|4070

Current chains

Chain L5
28S rRNA

Nearby chains

Chain Li
eL36
Chain SB
eS1

Coloring options:


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