IL_8G60_168

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

8G60|1|L5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_168 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2384

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8G60|1|L5|G|4680
8G60|1|L5|A|4681
8G60|1|L5|U|4682
8G60|1|L5|U|4683
8G60|1|L5|A|4684
8G60|1|L5|U|4685
*
8G60|1|L5|A|4705
8G60|1|L5|G|4706
8G60|1|L5|A|4707
8G60|1|L5|A|4708
8G60|1|L5|U|4709
8G60|1|L5|C|4710

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

uL6

Chain LO

uL13

Chain Lm

eL40