IL_8G60_174

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UCCUG*CGUCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_174 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.3173

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8G60|1|L5|U|4885
8G60|1|L5|C|4886
8G60|1|L5|C|4887
8G60|1|L5|U|4888
8G60|1|L5|G|4889
*
8G60|1|L5|C|4930
8G60|1|L5|G|4931
8G60|1|L5|U|4932
8G60|1|L5|C|4933
8G60|1|L5|A|4934

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

eL6

Chain LM

eL14

Chain LO

uL13