IL_8G60_231

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

G(PSU)U*AAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_231 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.1884

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8G60|1|S2|G|680
8G60|1|S2|PSU|681
8G60|1|S2|U|682
*
8G60|1|S2|A|1023
8G60|1|S2|A|1024
8G60|1|S2|U|1025

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SL

uS17

Chain SN

uS15

Chain SW

uS8

Chain SX

uS12