IL_8G60_238

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

8G60|1|S2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_238 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.2444

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8G60|1|S2|G|925
8G60|1|S2|A|926
8G60|1|S2|C|927
*
8G60|1|S2|G|1014
8G60|1|S2|U|1015
8G60|1|S2|U|1016
8G60|1|S2|U|1017

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SN

uS15

Chain Sb

eS27