IL_8G60_242

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

8G60|1|S2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_242 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1335

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8G60|1|S2|G|952
8G60|1|S2|C|953
8G60|1|S2|U|954
8G60|1|S2|A|955
8G60|1|S2|G|956
*
8G60|1|S2|C|967
8G60|1|S2|U|968
8G60|1|S2|U|969
8G60|1|S2|G|970
8G60|1|S2|G|971
8G60|1|S2|A|972
8G60|1|S2|C|973
8G60|1|S2|C|974

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SB

eS1

Chain SO

uS11