IL_8G60_249

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GGAGUA(PSU)G*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_249 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1763

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8G60|1|S2|G|1168
8G60|1|S2|G|1169
8G60|1|S2|A|1170
8G60|1|S2|G|1171
8G60|1|S2|U|1172
8G60|1|S2|A|1173
8G60|1|S2|PSU|1174
8G60|1|S2|G|1175
*
8G60|1|S2|U|1186
8G60|1|S2|G|1187
8G60|1|S2|A|1188
8G60|1|S2|A|1189
8G60|1|S2|A|1190
8G60|1|S2|C|1191

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Ln

eL41

Chain SX

uS12