3D structure

PDB id
8G60 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
CC(PSU)G*CGCG
Length
8 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G60_255 not in the Motif Atlas
Geometric match to IL_3WBM_002
Geometric discrepancy: 0.2649
The information below is about IL_3WBM_002
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

8G60|1|S2|C|1230
8G60|1|S2|C|1231
8G60|1|S2|PSU|1232
8G60|1|S2|G|1233
*
8G60|1|S2|C|1525
8G60|1|S2|G|1526
8G60|1|S2|C|1527
8G60|1|S2|G|1528

Current chains

Chain S2
18S rRNA

Nearby chains

Chain Pt
Transfer RNA; tRNA
Chain SP
uS19
Chain SQ
uS9
Chain SS
uS13
Chain ST
eS19
Chain SU
uS10

Coloring options:


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