IL_8G60_286

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_286 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.1635

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8G60|1|S2|C|1742
8G60|1|S2|G|1743
8G60|1|S2|G|1744
8G60|1|S2|A|1745
8G60|1|S2|U|1746
*
8G60|1|S2|A|1788
8G60|1|S2|G|1789
8G60|1|S2|A|1790
8G60|1|S2|A|1791
8G60|1|S2|G|1792

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

eL24

Chain SG

eS6

Chain SI

eS8