IL_8G60_310

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

8G60|1|L5|A2M|3785, 8G60|1|L5|C|3791, 8G60|1|L5|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_310 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1021

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8G60|1|L5|C|3781
8G60|1|L5|5MC|3782
8G60|1|L5|A|3783
8G60|1|L5|A|3784
8G60|1|L5|A2M|3785
8G60|1|L5|U|3786
8G60|1|L5|G|3787
8G60|1|L5|C|3788
8G60|1|L5|C|3789
8G60|1|L5|U|3790
8G60|1|L5|C|3791
8G60|1|L5|OMG|3792
*
8G60|1|L5|OMC|3808
8G60|1|L5|G|3809
8G60|1|L5|C|3810
8G60|1|L5|G|3811

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

eL41

Chain S2

Small subunit ribosomal RNA; SSU rRNA