IL_8G60_326

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GGAUAAC*GCUAA(OMU)A(OMC)

Length

15 nucleotides

Bulged bases

8G60|1|S2|OMU|172

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_326 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.0987

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8G60|1|S2|G|145
8G60|1|S2|G|146
8G60|1|S2|A|147
8G60|1|S2|U|148
8G60|1|S2|A|149
8G60|1|S2|A|150
8G60|1|S2|C|151
*
8G60|1|S2|G|167
8G60|1|S2|C|168
8G60|1|S2|U|169
8G60|1|S2|A|170
8G60|1|S2|A|171
8G60|1|S2|OMU|172
8G60|1|S2|A|173
8G60|1|S2|OMC|174

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

eL24

Chain SG

eS6

Chain SY

eS24