IL_8G60_340

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

(PSU)GG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_340 not in the Motif Atlas

Homologous match to IL_8P9A_442

Geometric discrepancy: 0.3089

The information below is about IL_8P9A_442

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

8G60|1|S2|PSU|1347
8G60|1|S2|G|1348
8G60|1|S2|G|1349
*
8G60|1|S2|C|1380
8G60|1|S2|G|1381
8G60|1|S2|A|1382

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SA

uS2

Chain SC

uS5

Chain SD

uS3

Chain SR

eS17