IL_8G61_084

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8G61|1|L5|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G61_084 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.3534

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8G61|1|L5|G|2001
8G61|1|L5|A|2002
8G61|1|L5|G|2003
8G61|1|L5|U|2004
8G61|1|L5|G|2005
*
8G61|1|L5|C|2014
8G61|1|L5|U|2015
8G61|1|L5|C|2016

Current chains

Chain L5

28S rRNA

Nearby chains