IL_8G61_137

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

UGA*UGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G61_137 not in the Motif Atlas

Geometric match to IL_6CZR_118

Geometric discrepancy: 0.2384

The information below is about IL_6CZR_118

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

183

Unit IDs

8G61|1|L5|U|3950
8G61|1|L5|G|3951
8G61|1|L5|A|3952
*
8G61|1|L5|U|4060
8G61|1|L5|G|4061
8G61|1|L5|A|4062

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lz

60S ribosomal protein L10a

Chain SB

40S ribosomal protein S3a