3D structure

PDB id
8G61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.94 Å

Loop

Sequence
GA(PSU)C*GAC
Length
7 nucleotides
Bulged bases
8G61|1|L5|A|4292
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G61_143 not in the Motif Atlas
Geometric match to IL_2O3X_003
Geometric discrepancy: 0.214
The information below is about IL_2O3X_003
Detailed Annotation
Decoding loop related
Broad Annotation
Decoding loop related
Motif group
IL_31737.3
Basepair signature
cWW-L-cWW
Number of instances in this motif group
12

Unit IDs

8G61|1|L5|G|4291
8G61|1|L5|A|4292
8G61|1|L5|PSU|4293
8G61|1|L5|C|4294
*
8G61|1|L5|G|4316
8G61|1|L5|A|4317
8G61|1|L5|C|4318

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LT
60S ribosomal protein L21
Chain Lb
60S ribosomal protein L29
Chain Lo
60S ribosomal protein L36a

Coloring options:


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