IL_8G61_147

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G61_147 not in the Motif Atlas

Geometric match to IL_4V9F_084

Geometric discrepancy: 0.2074

The information below is about IL_4V9F_084

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8G61|1|L5|G|4405
8G61|1|L5|U|4406
8G61|1|L5|G|4407
*
8G61|1|L5|U|4435
8G61|1|L5|U|4436
8G61|1|L5|U|4437
8G61|1|L5|U|4438
8G61|1|L5|U|4439

Current chains

Chain L5

28S rRNA

Nearby chains

Chain At

Transfer RNA; tRNA

Chain LB

60S ribosomal protein L3

Chain LI

60S ribosomal protein L10