IL_8G61_166

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G61_166 not in the Motif Atlas

Geometric match to IL_3R1C_018

Geometric discrepancy: 0.1228

The information below is about IL_3R1C_018

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

8G61|1|L5|U|4638
8G61|1|L5|G|4639
8G61|1|L5|C|4640
*
8G61|1|L5|G|4659
8G61|1|L5|G|4660
8G61|1|L5|G|4661

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain Ld

60S ribosomal protein L31