3D structure

PDB id
8G61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.94 Å

Loop

Sequence
UCCUG*CGUCA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G61_174 not in the Motif Atlas
Geometric match to IL_8S95_002
Geometric discrepancy: 0.3256
The information below is about IL_8S95_002
Detailed Annotation
Triple non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

8G61|1|L5|U|4885
8G61|1|L5|C|4886
8G61|1|L5|C|4887
8G61|1|L5|U|4888
8G61|1|L5|G|4889
*
8G61|1|L5|C|4930
8G61|1|L5|G|4931
8G61|1|L5|U|4932
8G61|1|L5|C|4933
8G61|1|L5|A|4934

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LE
60S ribosomal protein L6
Chain LM
60S ribosomal protein L14
Chain LO
60S ribosomal protein L13a

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2359 s