3D structure

PDB id
8G61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.94 Å

Loop

Sequence
U(A2M)U*GUA
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G61_194 not in the Motif Atlas
Geometric match to IL_3SZX_003
Geometric discrepancy: 0.0873
The information below is about IL_3SZX_003
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

8G61|1|S2|U|26
8G61|1|S2|A2M|27
8G61|1|S2|U|28
*
8G61|1|S2|G|646
8G61|1|S2|U|647
8G61|1|S2|A|648

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SJ
40S ribosomal protein S9
Chain SX
uS12

Coloring options:


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