IL_8G61_226

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

C(PSU)G*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G61_226 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.1733

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

8G61|1|S2|C|608
8G61|1|S2|PSU|609
8G61|1|S2|G|610
*
8G61|1|S2|C|633
8G61|1|S2|A|634
8G61|1|S2|G|635

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SD

40S ribosomal protein S3

Chain SX

uS12

Chain Se

FAU ubiquitin-like and ribosomal protein S30