3D structure

PDB id
8G61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.94 Å

Loop

Sequence
GAG*U(PSU)C
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G61_255 not in the Motif Atlas
Geometric match to IL_7RQB_030
Geometric discrepancy: 0.2846
The information below is about IL_7RQB_030
Detailed Annotation
Isolated cWS basepair
Broad Annotation
No text annotation
Motif group
IL_52767.4
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
28

Unit IDs

8G61|1|S2|G|1222
8G61|1|S2|A|1223
8G61|1|S2|G|1224
*
8G61|1|S2|U|1642
8G61|1|S2|PSU|1643
8G61|1|S2|C|1644

Current chains

Chain S2
18S rRNA

Nearby chains

Chain Pt
Transfer RNA; tRNA
Chain SF
40S ribosomal protein S5
Chain SQ
40S ribosomal protein S16

Coloring options:


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