IL_8G61_288

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

C(4AC)G*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G61_288 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1101

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8G61|1|S2|C|1841
8G61|1|S2|4AC|1842
8G61|1|S2|G|1843
*
8G61|1|S2|C|1856
8G61|1|S2|G|1857
8G61|1|S2|G|1858

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain SO

40S ribosomal protein S14

Chain Sa

40S ribosomal protein S26