IL_8G61_325

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

(OMU)CC(PSU)U(OMU)*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G61_325 not in the Motif Atlas

Homologous match to IL_8P9A_382

Geometric discrepancy: 0.225

The information below is about IL_8P9A_382

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29223.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8G61|1|S2|OMU|116
8G61|1|S2|C|117
8G61|1|S2|C|118
8G61|1|S2|PSU|119
8G61|1|S2|U|120
8G61|1|S2|OMU|121
*
8G61|1|S2|A|343
8G61|1|S2|U|344
8G61|1|S2|U|345
8G61|1|S2|C|346
8G61|1|S2|G|347

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SI

40S ribosomal protein S8