IL_8G6J_012

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGG,CCG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6J_012 not in the Motif Atlas

Geometric match to IL_1NBS_006

Geometric discrepancy: 0.2776

The information below is about IL_1NBS_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8G6J|1|L5|C|175
8G6J|1|L5|G|176
8G6J|1|L5|G|177
*
8G6J|1|L5|C|259
8G6J|1|L5|C|260
8G6J|1|L5|G|261

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lh

60S ribosomal protein L35