IL_8G6J_034

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUUC*GG

Length

6 nucleotides

Bulged bases

8G6J|1|L5|U|513

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6J_034 not in the Motif Atlas

Geometric match to IL_3RW6_003

Geometric discrepancy: 0.3117

The information below is about IL_3RW6_003

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_24264.1

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

8G6J|1|L5|U|512
8G6J|1|L5|U|513
8G6J|1|L5|U|514
8G6J|1|L5|C|515
*
8G6J|1|L5|G|646
8G6J|1|L5|G|647

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

eL13