IL_8G6J_051

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6J_051 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3119

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8G6J|1|L5|G|1425
8G6J|1|L5|G|1426
8G6J|1|L5|A|1427
8G6J|1|L5|U|1428
8G6J|1|L5|C|1429
*
8G6J|1|L5|G|1455
8G6J|1|L5|C|1456
8G6J|1|L5|G|1457
8G6J|1|L5|C|1458
8G6J|1|L5|A|1459
8G6J|1|L5|C|1460

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain Lb

60S ribosomal protein L29